Team:Tyngsboro MA Tigers

From 2012hs.igem.org

(Difference between revisions)
(→Notebook)
 
(449 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
https://static.igem.org/mediawiki/2012hs/2/2c/Screen_shot_2012-06-14_at_9.39.45_PM.png
<html>
<html>
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #fe2b33; /*background-color: #fe2b33;*/">
+
<head>
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; /*color: #f6f6f6*/; padding: 5px;">
+
-
This is a template page. READ THESE INSTRUCTIONS.
+
-
</div>
+
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; /*color: #f6f6f6*/; padding: 5px;">
+
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="/*text-align: center;*/ font-weight: bold; font-size: small; /*color: #f6f6f6*/; padding: 5px;">
+
-
You <strong>MUST</strong> have the following information on your wiki:
+
-
<ul style="font-weight:normal;">
+
-
<li>a team description</li>
+
-
<li>project description</li>
+
-
<li>safety information (did your team take a safety training course? were you supervised in the lab?)</li>
+
-
<li>team attribution (who did what part of your project?)</li>
+
-
</ul>
+
-
You may also wish to add other page such as:
+
-
<ul style="font-weight:normal;">
+
-
<li>lab notebook</li>
+
-
<li>sponsor information</li>
+
-
<li>other information</li>
+
-
</ul>
+
-
REMEMBER, keep all of your pages within your teams namespace. <br><span style="font-weight:normal; font-style:italic;">Example: 2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Our_Pets</span>
+
-
</div>
+
-
</div>
+
-
</html>
+
-
<!-- *********************** End of the alert box *********************** -->
+
<style>
 +
#p-logo {
 +
display:none;
 +
}
 +
body {
 +
    background-color:#004965;
 +
    //background-image:url("https://static.igem.org/mediawiki/2011/3/3a/Bg.png");
 +
}
 +
#top-section {
 +
height:18px;
 +
border:none;
 +
        border-bottom:1px solid black;
 +
        padding:0px;
 +
}
-
{|align="justify"
+
h1.firstHeading {
-
|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
+
display:none;
-
|[[Image:Tyngsboro_MA_Tigers_logo.png|200px|right|frame]]
+
}
-
|-
+
h3#siteSub {
-
|
+
display:none;
-
''Tell us more about your project.  Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
+
}
-
|[[Image:Tyngsboro_MA_Tigers_team.png|right|frame|Your team picture]]
+
#contentSub {
-
|-
+
display:none;
-
|
+
}
-
|align="center"|[[Team:Tyngsboro_MA_Tigers | Team Tyngsboro_MA_Tigers]]
+
#search-controls
-
|}
+
{
 +
display:none;
 +
}
 +
.header {
 +
    padding:0px;
 +
}
 +
</style>
-
<!--- Team Information Link --->
+
</head>
 +
</html>
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
<html>
-
!align="center"|[https://igem.org/Team.cgi?year=2012&division=high_school&team_name=Tyngsboro_MA_Tigers Official Team Profile]
+
<div class="content_box">
-
|}
+
<img class="header" src="https://static.igem.org/mediawiki/2012hs/3/39/Bridge.jpg" width="965" />
-
===Team===
+
<table cellspacing="0" cellpadding="0" border="0" ALIGN="center">
-
We're the twelve-strong inaugural Tiger Squad at Tyngsborough High School in Tyngsborough, Massachusetts, with a real interest in using our science knowledge to help the community and learn about synthetic biology along the way!
+
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/KathleenB Kathleen Barrett] (Liaison)
+
<th>
 +
<a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers">
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/MiaP Mia Pavao] (Secretary)
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers">
 +
<img src="https://static.igem.org/mediawiki/2012hs/c/c7/Wiki_Menu_Home.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/LizzyS Lizzy Seltz] (Lab Manager)
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Team">
 +
<img src="https://static.igem.org/mediawiki/2012hs/archive/c/c6/20120615001814%21Wiki_Menu_Team.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/MichaelS Michael Sheets] (Media Specialist)
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Project">
 +
<img src="https://static.igem.org/mediawiki/2012hs/archive/6/6d/20120615002206%21Wiki_Menu_Project.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/ElizabethB Elizabeth Barrett] (Public Relations)
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Results">
 +
<img src="https://static.igem.org/mediawiki/2012hs/archive/c/c6/20120615002620%21Wiki_Menu_Results.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/MadisonV Madison Vigneault] (Treasurer)
 
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/TaylorV Taylor Vigneault] (Treasurer)
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Human Practices">
 +
<img src="https://static.igem.org/mediawiki/2012hs/d/dc/Wiki_Menu_HumanPractices.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/CharlieS Charlie Savard]
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Notebook">
 +
<img src="https://static.igem.org/mediawiki/2012hs/archive/1/13/20120615002916%21Wiki_Menu_Notebook.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/BrianF Brian Fidler]
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Safety">
 +
<img src="https://static.igem.org/mediawiki/2012hs/8/84/Wiki_Menu_Safety.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/KevinB Kevin Barrett]
+
<th><a href="https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/Attributions">
 +
<img src="https://static.igem.org/mediawiki/2012hs/archive/3/36/20120615003237%21Wiki_Menu_Attributions.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/ShannonJ Shannon Jackson]
+
<th><a href="https://2012hs.igem.org/">
 +
<img src="https://static.igem.org/mediawiki/2012hs/7/76/Wiki_Menu_MainPage.jpg" height="107" />
 +
</a>
 +
</th>
-
[https://2012hs.igem.org/Team:Tyngsboro_MA_Tigers/BrianP Brian Parlee]
 
-
===Project===
+
</table>
-
'''The Problem:'''
+
</div>
 +
<br><br>
 +
<center><iframe src="http://free.timeanddate.com/countdown/i35kxk1a/n851/cf101/cm0/cu4/ct0/cs0/ca0/cr0/ss0/cac000/cpc000/pc090/tc66c/fs100/szw320/szh135/tatUntil%20HS%20Jamboree!/tac000/tptJamboree!/tpc000/matGo%20iGEM!/mac000/mpt2012/mpc000/iso2012-06-30T00:00:00/bo2" frameborder="0" width="322" height="137"></iframe></center>
-
A colorless, odorless, and soundless killer takes the lives of nearly 2,100 innocent United States citizens every year; that is an average of 3 people every day. CO poisoning is the leading cause of unintentional poisoning deaths in the United States and 1 in every 2,400 people falls victim to CO poisoning. Males are 2.3 times more
+
</html>
-
likely to die from CO poisoning than females and people over the age of 65 have the highest risk of dieing from the silent killer. Only by being aware of the grave danger, and understanding the structure and works of the gas, we can create a circuit giving a scent to CO.
+
-
 
+
-
Citation-
+
-
"Carbon Monoxide Poisoning Statistics." Christensen Law Firm. 03
+
-
Sept. 2010. Web. 1 Mar. 2012.  [<http://www.utahpersonalinjurylawfirm.com/2010/09/carbon-monoxide-poisoning-statistics/>].
+
-
 
+
-
'''Our Idea:'''
+
-
 
+
-
We are looking to develop a genetic circuit for bacteria that converts the odorless carbon monoxide into a malodorous output.  Coupled with the common household detector, we might be able to reduce even further CO-related deaths.
+
-
 
+
-
'''R. rubrum:'''
+
-
 
+
-
Rhodospirillum rubrum is a bacterium that uses carbon monoxide as an energy source. This photosynthetic bacterium can metabolize carbon monoxide in the reaction:
+
-
CO + H2O --> CO2 + H2
+
-
 
+
-
The enzyme carbon monoxide dehydrogenase (CODH) is a peripheral membrane protein that carries out the primary oxidation of CO to CO2 and then passes the products through a ferredoxin-like sub-unit. R. rubrum also has a carbon monoxide-sensing protein called CooA that activates the gene expression of oxidation enzymes.
+
-
In our research on R. rubrum, we found that a Turkey iGEM team in the 2010 college division developed CooA and CooA-responsive promoter biobricks they wanted make to transform into E. coli. They were able to successfully build these parts, and now our goal is to try and put them into our own genetic circuit that, in the presence of carbon monoxide, will output an unpleasant warning smell.
+
-
 
+
-
Our genetic circuit:[br]
+
-
[[File:cell1.PNG]]
+
-
 
+
-
===Notebook===
+
-
'''Finding Our Idea'''
+
-
 
+
-
'''Creating the Genetic Circuit'''
+
-
Once we had our idea solidified, the next step was coming up with a circuit to make our idea into a reality.  Using the [http://www.tinkercell.com/ TinkerCell] program to create an example of the cell, we wanted to follow the KISS rule and keep things as simple as possible.  The [https://2010.igem.org/Team:METU_Turkey/Team 2010 METU iGEM team] created a [http://partsregistry.org/wiki/index.php?title=Part:BBa_K352014 part] that successfully detected carbon monoxide, and contained a Lacl promoter, RBS, and CooA, but from that point what the output was seemed to be fairly open for change.  We wanted the output smell to be very unpleasant and trigger a negative response, and decided indole, the smell naturally made by e. coli, would be an excellent choice.  We chose tnaA, the indole producing gene, as the last major step in our genetic sequence, and an [http://partsregistry.org/wiki/index.php?title=Part:BBa_J45999 odorless chassis] so that indole wouldn't be naturally produced by the detector.
+
-
 
+
-
Obstacles in creating the circuit were finding a tnaA producing gene (still working on that) and...
+
-
 
+
-
The parts chosen were all marked as 'working' in the parts registry, and most had the same assembly methods, making them compatible.  Our major concerns are that we won't be able to find a tnaA gene by itself, or that the parts chosen won't work be compatible in practice.
+
-
 
+
-
Also, special thanks go out to our iGEM adviser, Alyssa Henning!
+
-
 
+
-
 
+
-
'''Fundraising'''
+
-
 
+
-
===Results/Conclusions===
+
-
What did you achieve over the course of your semester?
+
-
 
+
-
 
+
-
===Safety===
+
-
[[File:Safety_Contract-1.pdf]]
+
-
What safety precautions did your team take? Did you take a safety training course? Were you supervised at all times in the lab?
+
-
 
+
-
===Attributions===
+
-
Who worked on what?
+
-
 
+
-
 
+
-
===Human Practices===
+
-
What impact does/will your project have on the public? 
+
-
===Fun!===
+
<p style="text-align:center; font-size:20pt; font-style: Garamond;"><strong>Where We Are From</strong></p>
-
What was your favorite team snack?? Have a picture of your team mascot?
+
 +
Tyngsborough, Massachusetts is a small historic town 44 miles outside of Boston. Although Tyngsborough is only 17.86 square miles, its population is currently 11,673. We are considered a commuter town to Boston, Massachusetts, and Nashua, New Hampshire. Tyngsborough was originally purchased from native Indians and was formally established as a town on February 23, 1809. Tyngsborough is best known for its 547 foot long, green bridge spanning the Merrimack River. The Tyngsborough Bridge was built in 1931 and connects the east and west sides of town. Tyngsborough is also known for Sullivan Farms Ice Cream, a locally owned, homemade ice cream stand, and Parlee Farms which serves ice cream, grows "pick-your-own" fruits, and showcases a small enclosure for feeding farm animals (http://www.tyngsboroughmass.com/).
-
<forum_subtle />
+
                                            [[File:‎Tyngsborough.jpg]]‎
 +
Image Source: [http://www.epodunk.com/cgi-bin/genInfo.php?locIndex=66419 Profile for Tyngsborough, MA]

Latest revision as of 14:10, 27 November 2012

Screen_shot_2012-06-14_at_9.39.45_PM.png




Where We Are From

Tyngsborough, Massachusetts is a small historic town 44 miles outside of Boston. Although Tyngsborough is only 17.86 square miles, its population is currently 11,673. We are considered a commuter town to Boston, Massachusetts, and Nashua, New Hampshire. Tyngsborough was originally purchased from native Indians and was formally established as a town on February 23, 1809. Tyngsborough is best known for its 547 foot long, green bridge spanning the Merrimack River. The Tyngsborough Bridge was built in 1931 and connects the east and west sides of town. Tyngsborough is also known for Sullivan Farms Ice Cream, a locally owned, homemade ice cream stand, and Parlee Farms which serves ice cream, grows "pick-your-own" fruits, and showcases a small enclosure for feeding farm animals (http://www.tyngsboroughmass.com/). 


                                           File:Tyngsborough.jpg‎

Image Source: Profile for Tyngsborough, MA

Retrieved from "http://2012hs.igem.org/Team:Tyngsboro_MA_Tigers"