Team:CIDEB-UANL Mexico/Math/Equations

From 2012hs.igem.org

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Revision as of 07:23, 17 June 2012

Team: UANL_Mty-Mexico

Team: CIDEB-UANL Mexico

Equations

Math Model Equations

The system of equations that describe the system (circuit) are presented here.

The constants can be found in the parameters list in the column: C. Name.

Describing the production of the protein araC.

High Concentration!

Due to Cambridge 2009 recommendations, we’ve decided to use the next expression to describe the concentration of the “active repressor”.

(https://2009.igem.org/Team:Cambridge/Modelling)

A is the Arabinose concentration that can vary so it is not a constant.

So the concentration of the protein YFP is presented as follow.

Production of mRNA for the protein cl434

Low Concentration!

Stand - By!

https://static.igem.org/mediawiki/2012hs/a/a1/Equation9.png " rel="lightbox"> Organization Chart

References:

https://2009.igem.org/Team:PKU_Beijing/Modeling/Parameters

https://2011.igem.org/Team:UANL_Mty-Mexico/Modelling/Parameters

https://2009.igem.org/Team:Cambridge/Modelling

https://2011.igem.org/Team:St_Andrews/modelling

iGEM High School Division, 2012 edition - CIDEB-UANL_Mexico team

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      <div id="leftColumn">
      	<div id="ColorHeader">
-             Math: Equations
+             Equations
     	  	</div>
+<div class="br"></div><div class="br"></div>
+   <div id="header-project-column">
+<div class="br2"></div><div class="br2"></div><div class="br2"></div>
+           <a name="Equations"></a>Math Model Equations
+<div class="br2"></div><div class="br2"></div>
+      </div>
+<div class="br"></div><div class="br"></div>
+<p>The system of equations that describe the system (circuit) are presented here.</p>
+<p>The constants can be found in the parameters list in the column: C. Name.</p>
+<p>Describing the production of the protein araC.</p>
 <div class="br"></div><div class="br"></div>
 <div class="br"></div><div class="br"></div>
-<img src="https://static.igem.org/mediawiki/2012hs/c/c1/EquationsPDF1.jpg"width="700px" height="888px" align="center">
+<center>
-<img src="https://static.igem.org/mediawiki/2012hs/6/64/EquationsPDF2.jpg"width="700px" height="888px" align="center">
+<div class = "img-holder" style="width:600px; font-size: 18px;">
-<img src="https://static.igem.org/mediawiki/2012hs/3/33/EquationsPDF3.jpg"width="700px" height="888px" align="center">
+<a href=" https://static.igem.org/mediawiki/2012hs/c/c4/Equation1.png
-<img src="https://static.igem.org/mediawiki/2012hs/e/e5/EquationsPDF4.jpg"width="700px" height="888px" align="center">
+" rel="lightbox">
-<img src="https://static.igem.org/mediawiki/2012hs/c/c1/EquationsPDF5.jpg"width="700px" height="888px" align="center">
+<img src=" https://static.igem.org/mediawiki/2012hs/c/c4/Equation1.png
+"width="600px" height="169px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+  <div id="header-project-column">
+<div class="br2"></div><div class="br2"></div><div class="br2"></div>
+           <a name="Highconcent"></a>High Concentration!
+<div class="br2"></div><div class="br2"></div>
+      </div>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:600px; font-size: 18px;">
+<a href=" https://static.igem.org/mediawiki/2012hs/e/ea/Equation2.png
+" rel="lightbox">
+<img src=" https://static.igem.org/mediawiki/2012hs/e/ea/Equation2.png
+"width="600px" height="64px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+<p>Due to Cambridge 2009 recommendations, we’ve decided to use the next expression to describe the concentration of the “active repressor”.</p>
+<p>(https://2009.igem.org/Team:Cambridge/Modelling)</p>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:273px; font-size: 18px;">
+<a href="https://static.igem.org/mediawiki/2012hs/e/ed/Equation3.png" rel="lightbox">
+<img src="https://static.igem.org/mediawiki/2012hs/e/ed/Equation3.png
+"width="273px" height="213px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+<p>A is the Arabinose concentration that can vary so it is not a constant.</p>
+<p><b>So the concentration of the protein YFP is presented as follow.</b></p>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:466px; font-size: 18px;">
+<a href=" https://static.igem.org/mediawiki/2012hs/b/b0/Equation4.png" rel="lightbox">
+<img src=" https://static.igem.org/mediawiki/2012hs/b/b0/Equation4.png"width="466px" height="139px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+<p><b>Production of mRNA for the protein cl434</b></p>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:488px; font-size: 18px;">
+<a href=" https://static.igem.org/mediawiki/2012hs/9/92/Equation5.png " rel="lightbox">
+<img src=" https://static.igem.org/mediawiki/2012hs/9/92/Equation5.png "width="488px" height="308px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+ <div id="header-project-column">
+<div class="br2"></div><div class="br2"></div><div class="br2"></div>
+           <a name="Lowconcent"></a>Low Concentration!
+<div class="br2"></div><div class="br2"></div>
+      </div>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:384px; font-size: 18px;">
+<a href=" https://static.igem.org/mediawiki/2012hs/1/1c/Equation7.png
+" rel="lightbox">
+<img src=" https://static.igem.org/mediawiki/2012hs/1/1c/Equation7.png
+"width="384px" height="516px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:262px; font-size: 18px;">
+<a href=" https://static.igem.org/mediawiki/2012hs/e/ea/Equation8.png
+" rel="lightbox">
+<img src="https://static.igem.org/mediawiki/2012hs/e/ea/Equation8.png
+ "width="262px" height="93px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+ <div id="header-project-column">
+<div class="br2"></div><div class="br2"></div><div class="br2"></div>
+           <a name="Standby"></a>Stand - By!
+<div class="br2"></div><div class="br2"></div>
+      </div>
+<div class="br"></div><div class="br"></div>
+<div class="br"></div><div class="br"></div>
+<center>
+<div class = "img-holder" style="width:398px; font-size: 18px;"> https://static.igem.org/mediawiki/2012hs/a/a1/Equation9.png " rel="lightbox">
+<img src="https://static.igem.org/mediawiki/2012hs/a/a1/Equation9.png"width="398px" height="374px" alt="Organization Chart" align="center">
+</a>
+<span class="img-holder-text"><b></b> </div><div class="br">
+</center>
+<div class="br"></div><div class="br"></div><div class="br"></div><div class="br"></div<div class="br"></div><div class="br"></div><div class="br"></div><div class="br"></div
+<p><b>References:</b><p>
+<li><a href="https://2009.igem.org/Team:PKU_Beijing/Modeling/Parameters">https://2009.igem.org/Team:PKU_Beijing/Modeling/Parameters</a>
+<li><a href="https://2011.igem.org/Team:UANL_Mty-Mexico/Modelling/Parameters" title="https://2011.igem.org/Team:UANL_Mty-Mexico/Modelling/Parameters">https://2011.igem.org/Team:UANL_Mty-Mexico/Modelling/Parameters</a></li>
+<li><a href="https://2010.igem.org/Team:Brown/Modeling/ODEs" title="https://2010.igem.org/Team:Brown/Modeling/ODEs>https://2010.igem.org/Team:Brown/Modeling/ODEs</a></li>
+<li><a href="https://2009.igem.org/Team:Cambridge/Modelling" title="https://2009.igem.org/Team:Cambridge/Modelling">https://2009.igem.org/Team:Cambridge/Modelling</a></li>
+<li><a href="https://2011.igem.org/Team:St_Andrews/modelling" title="https://2011.igem.org/Team:St_Andrews/modelling">https://2011.igem.org/Team:St_Andrews/modelling</a></li>
 <div class="br"></div>
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      <div id="botonera">
+    <div class="lateral-button"><a href="#Equations">Equations</a></div>
+<div class="lateral-button"><a href="#Highconcent">High Concentration</a></div>
+<div class="lateral-button"><a href="#Lowconcent">Low Concentration</a></div>
+<div class="lateral-button"><a href="#Standby">Stand By</a></div>