Team:Lethbridge Canada/Results

From 2012hs.igem.org

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='''Results'''=
='''Results'''=
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==Parts created==
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==Parts Created==
We created two new parts, [http://partsregistry.org/Part:BBa_K736000 BBa_K736000] (which regulated the transcription of downstream genes) and [http://partsregistry.org/Part:BBa_K736001 BBa_K736001] (which was a TAT signal sequence fused to a red fluorescent protein, E1010). We also assembled two parts, [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736002 BBa_K736002] (which tests the ability of glucose to regulate transcription and uses enhanced RFP as the reporter) and [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736003 BBa_K736003] (which tests for the ability of the TAT sequence to cause secretion of protein outside of the cell and also uses RFP as a reporter). We also created one part that coded for human insulin chain A ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736004 BBa_K736004]) and one part that coded for human insulin chain B ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736005 BBa_K736005]).  We are also submitting the DNA for [http://partsregistry.org/Part:BBa_K331009 K331009] which was in its planning stage in the registry.   
We created two new parts, [http://partsregistry.org/Part:BBa_K736000 BBa_K736000] (which regulated the transcription of downstream genes) and [http://partsregistry.org/Part:BBa_K736001 BBa_K736001] (which was a TAT signal sequence fused to a red fluorescent protein, E1010). We also assembled two parts, [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736002 BBa_K736002] (which tests the ability of glucose to regulate transcription and uses enhanced RFP as the reporter) and [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736003 BBa_K736003] (which tests for the ability of the TAT sequence to cause secretion of protein outside of the cell and also uses RFP as a reporter). We also created one part that coded for human insulin chain A ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736004 BBa_K736004]) and one part that coded for human insulin chain B ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736005 BBa_K736005]).  We are also submitting the DNA for [http://partsregistry.org/Part:BBa_K331009 K331009] which was in its planning stage in the registry.   
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==='''Proof of Principle'''===
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=='''Insulin Red Fluorescent Protein Proof of Principle'''==
TAT signal sequence  
TAT signal sequence  
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Preliminary results
Preliminary results
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Cultures were grown containing pLacI promoter attached to a Twin Arginine tag signal sequence and fused to red fluorescent protein.  Samples were taken at various time points and examined for fluorescents when excited at 586nm with an expected emission at 607nm.  We used a fluorescents spectrophotometer to measure the red fluorescent protein present in the supernatant after spinning the cells to a pellet.  We used a constutively expressed construct expressing Red fluorescent protein( J23100 in J61002)
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Cultures were grown containing LacI promoter attached to a twin arginine tag (TAT) signal sequence and fused to a red fluorescent protein (E1010).  Samples were taken at various time points and examined for fluorescence when excited at 586nm with an expected emission at 607nm.  We used a fluorescence spectrophotometer to measure the red fluorescent protein present in the supernatant after spinning the cells to a pellet.  We used a constutively expressed construct expressing Red fluorescent protein( J23100 in J61002)
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Fluorescents was measured one hour after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescence was measured one hour after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescents was measured two hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescence was measured two hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescents was measured three hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescence was measured three hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescents was measured four hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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Fluorescence was measured four hours after induction, no difference could be seen between the test and control constructs in the supernatant .  
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==Glucose Concentration Assay==
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Preliminary Results
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Cultures were grown containing constitutively expressed promoter J23100 attached to an MlC binding sight sequence and a red fluorescent protein.  Samples were inoculated in varying concentrations of Glucose (0=0 mg/dl, 20= 12.5mg/dl, 40=25mg/dl, 80=50mg/dl, 160=100mg/dl, 320=200mg/dl, 1600=1000mg/dl).  Samples were taken after 1.5 hour time points post inoculation and examined for fluorescents when excited at 586nm with an expected emission at 607nm.  We used a fluorescents spectrophotometer to measure the red fluorescent protein present in cell lysate after spinning the cells to a pellet and re-suspending in 8M urea. 
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[[Image:Glucose assay 3 hour time point.JPG|left|px]]
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Fluorescence was measured three hours after inoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed. 
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[[Image:Glucose variable concentrations 4.5 hours.JPG|left|px]]
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Fluorescence was measured four and a half hours after inoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed. 
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'''Glucose Variable Concentrations'''
 
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Preliminary Results
 
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Cultures were grown containing constitutively expressed promoter J23100 attached to an MlC binding sight sequence and a red fluorescent protein.  Samples were inoculated in varying concentrations of Glucose (0=0 mg/dl, 20= 12.5mg/dl, 40=25mg/dl, 80=50mg/dl, 160=100mg/dl, 320=200mg/dl, 1600=1000mg/dl).  Samples were taken after 1.5 hour time points post inoculation and examined for fluorescents when excited at 586nm with an expected emission at 607nm.  We used a fluorescents spectrophotometer to measure the red fluorescent protein present in cell lysate after spinning the cells to a pellet and re-suspending in 8M urea. 
 
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[[Image:Glucose assay 3 hour time point.JPG|left|px]]
 
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[[Image:Glucose variable concentrations 4.5 hours.JPG|left|px]]
 
[[Image:Glucose variable concentrations 6 hours.JPG|left|px]]
[[Image:Glucose variable concentrations 6 hours.JPG|left|px]]
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Fluorescence was measured six hours after innoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed. 
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Latest revision as of 07:58, 17 June 2012

Project.JPG
Home The Team The Project Results Human Practices Notebook Safety



Contents

Results

Parts Created

We created two new parts, [http://partsregistry.org/Part:BBa_K736000 BBa_K736000] (which regulated the transcription of downstream genes) and [http://partsregistry.org/Part:BBa_K736001 BBa_K736001] (which was a TAT signal sequence fused to a red fluorescent protein, E1010). We also assembled two parts, [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736002 BBa_K736002] (which tests the ability of glucose to regulate transcription and uses enhanced RFP as the reporter) and [http://partsregistry.org/wiki/index.php?title=Part:BBa_K736003 BBa_K736003] (which tests for the ability of the TAT sequence to cause secretion of protein outside of the cell and also uses RFP as a reporter). We also created one part that coded for human insulin chain A ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736004 BBa_K736004]) and one part that coded for human insulin chain B ([http://partsregistry.org/wiki/index.php?title=Part:BBa_K736005 BBa_K736005]). We are also submitting the DNA for [http://partsregistry.org/Part:BBa_K331009 K331009] which was in its planning stage in the registry.



NameTypeDescriptionLength
[http://partsregistry.org/Part:BBa_K736000 BBa_K736000]RegulatoryConstitutive Promoter (J23100) with MLC (glucose-regulated) binding site36 bp
[http://partsregistry.org/Part:BBa_K736001 BBa_K736001]ReporterTAT signal sequence fused to red fluorescent protein (E1010)720 bp
[http://partsregistry.org/Part:BBa_K736002 BBa_K736002]CompositeConstitutive Promoter with MLC-binding-site-regulated enhanced RFP913 bp
[http://partsregistry.org/Part:BBa_K736003 BBa_K736003]CompositepLAC-regulated TAT-RFP construct948 bp
[http://partsregistry.org/Part:BBa_K736004 BBa_K736004]Coding Coding sequence for insulin chain A72 bp
[http://partsregistry.org/Part:BBa_K736005 BBa_K736005]Coding Coding sequence for insulin chain B99 bp



Insulin Red Fluorescent Protein Proof of Principle

TAT signal sequence

RFP with Cells Media at Different Induction Levels

Preliminary results

Cultures were grown containing LacI promoter attached to a twin arginine tag (TAT) signal sequence and fused to a red fluorescent protein (E1010). Samples were taken at various time points and examined for fluorescence when excited at 586nm with an expected emission at 607nm. We used a fluorescence spectrophotometer to measure the red fluorescent protein present in the supernatant after spinning the cells to a pellet. We used a constutively expressed construct expressing Red fluorescent protein( J23100 in J61002)


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Fluorescence was measured one hour after induction, no difference could be seen between the test and control constructs in the supernatant .







px





Fluorescence was measured two hours after induction, no difference could be seen between the test and control constructs in the supernatant .








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Fluorescence was measured three hours after induction, no difference could be seen between the test and control constructs in the supernatant .






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Fluorescence was measured four hours after induction, no difference could be seen between the test and control constructs in the supernatant .








Glucose Concentration Assay

Preliminary Results

Cultures were grown containing constitutively expressed promoter J23100 attached to an MlC binding sight sequence and a red fluorescent protein. Samples were inoculated in varying concentrations of Glucose (0=0 mg/dl, 20= 12.5mg/dl, 40=25mg/dl, 80=50mg/dl, 160=100mg/dl, 320=200mg/dl, 1600=1000mg/dl). Samples were taken after 1.5 hour time points post inoculation and examined for fluorescents when excited at 586nm with an expected emission at 607nm. We used a fluorescents spectrophotometer to measure the red fluorescent protein present in cell lysate after spinning the cells to a pellet and re-suspending in 8M urea.



px





Fluorescence was measured three hours after inoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed.




px







Fluorescence was measured four and a half hours after inoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed.





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Fluorescence was measured six hours after innoculation, no RFP emission differences between cells grown in the different glucose concentrations were observed.



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